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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
174
single cell RNA-seq
135
total RNA-seq
102
ATAC-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
317
DNA binding
309
Transcription
135
DNA accessibility
22
DNA methylation
Target of assay
184
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
163
August, 2021
126
August, 2017
93
February, 2021
80
October, 2019
66
May, 2022
60
February, 2023
47
September, 2023
31
May, 2020
29
October, 2018
25
February, 2020
25
November, 2017
24
March, 2020
23
May, 2019
19
April, 2020
16
April, 2019
12
December, 2017
12
July, 2019
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
May, 2023
2
January, 2018
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
204
bam
159
tsv
157
txt
122
tagAlign
101
bed narrowPeak
97
fastq
60
bigWig
22
bed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
Organism
899
Homo sapiens
Biosample type
902
tissue
543
primary cell
195
cell line
125
in vitro differentiated cells
7
stem cell
Organ
133
kidney
122
liver
119
heart
115
pancreas
92
bone element
67
connective tissue
66
adipose tissue
62
brain
53
eye
34
musculature of body
27
blood vessel
27
vasculature
22
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
807
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
1744
hg19
Lab
671
AMP-T2D consortium
66
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assay_title!
Hi-C
assembly!
GRCh38
BIOSAMPLE
ASSAY
902 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
46
32
46
7
4
1
1
4
kidney
7
64
49
6
1
1
liver
70
1
20
20
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
36
3
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