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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
975
total RNA-seq
867
ChIP-seq
248
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1165
Transcription
867
DNA binding
458
DNA accessibility
38
DNA methylation
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
395
February, 2021
284
August, 2017
241
October, 2019
227
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
87
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
73
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
39
November, 2019
33
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1841
bam
1674
bigWig
1018
tsv
936
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
69
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
1
bed bed3
1
tagAlign bed3+
Organism
2554
Homo sapiens
Biosample type
2563
tissue
1077
primary cell
658
cell line
390
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
501
pancreas
488
adipose tissue
360
liver
298
kidney
270
heart
265
brain
bone element
132
blood vessel
132
vasculature
118
limb
76
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2466
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1753
GRCh38
1674
hg19
Lab
2254
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
9
audit script error
7
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
Hi-C
organ_slims!
bone element
BIOSAMPLE
ASSAY
2563 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
298
71
68
1
7
4
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
heart left ventricle
3
35
2
3
18
4
1
1
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