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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
867
ChIP-seq
593
total RNA-seq
252
ATAC-seq
178
DNase-seq
168
single cell RNA-seq
28
snATAC-seq
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
867
DNA binding
777
Transcription
462
DNA accessibility
16
3D chromatin structure
11
DNA methylation
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
275
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
65
July, 2019
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
25
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1438
bam
1272
bigWig
936
bed narrowPeak
624
tsv
561
bigBed narrowPeak
367
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
68
txt
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2156
Homo sapiens
Biosample type
2165
tissue
999
primary cell
565
cell line
368
in vitro differentiated cells
10
stem cell
Organ
501
pancreas
356
liver
291
kidney
265
brain
265
heart
131
blood vessel
131
vasculature
115
limb
97
connective tissue
96
adipose tissue
81
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2068
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1351
GRCh38
1303
hg19
Lab
1853
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
month_released!
February, 2021
BIOSAMPLE
ASSAY
2165 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
71
298
68
1
7
4
3
1
1
4
liver
145
167
20
2
1
1
1
1
kidney
27
49
75
13
59
6
1
1
1
heart left ventricle
35
3
2
3
18
1
1
1
body of pancreas
35
3
4
4
2
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