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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ATAC-seq
single cell RNA-seq
145
ChIP-seq
130
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
225
DNA accessibility
145
DNA binding
130
Transcription
21
DNA methylation
16
3D chromatin structure
Target of assay
127
histone
127
histone modification
66
narrow histone mark
61
broad histone mark
20
control
2
nucleotide modification
Date released
123
August, 2021
114
August, 2017
94
February, 2023
87
February, 2021
56
October, 2019
41
May, 2022
31
March, 2020
25
February, 2020
13
July, 2019
13
November, 2017
12
May, 2023
10
April, 2020
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
Available data
bam
1732
bigWig
973
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
144
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
654
Homo sapiens
Biosample type
656
tissue
392
primary cell
101
in vitro differentiated cells
80
cell line
7
stem cell
Organ
137
kidney
92
bone element
76
pancreas
72
liver
53
eye
49
connective tissue
48
adipose tissue
48
heart
40
blood vessel
40
vasculature
39
brain
37
artery
37
musculature of body
15
epithelium
11
lung
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
617
AMP
29
T1D
10
LungMap
Genome assembly (visualization)
116
GRCh38
107
hg19
Lab
436
AMP-T2D consortium
131
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
4
audit script error
Audit category:
1
missing controlled_by
assay_title!
single cell RNA-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
656 results
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ATAC-seq
ChIP-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
49
6
1
1
islet of Langerhans
30
41
26
7
4
3
1
4
bone element
84
liver
20
23
20
1
1
1
3
subcutaneous abdominal adipose tissue
36
3
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