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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1015
total RNA-seq
672
ChIP-seq
244
ATAC-seq
174
DNase-seq
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1031
Transcription
672
DNA binding
450
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
425
histone modification
424
histone
244
broad histone mark
180
narrow histone mark
160
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
284
August, 2017
October, 2019
193
May, 2020
163
June, 2019
123
August, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
48
December, 2017
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
12
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1721
bam
1572
bigWig
965
tsv
793
bed narrowPeak
514
bigBed narrowPeak
377
fastq
209
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
144
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
1
bedpe
Organism
2312
Homo sapiens
Biosample type
2321
tissue
867
primary cell
632
cell line
384
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
502
pancreas
487
adipose tissue
354
liver
231
kidney
179
brain
172
heart
158
bone element
101
blood vessel
101
vasculature
81
musculature of body
53
limb
45
artery
35
eye
25
spleen
18
ureter
16
skeleton
15
epithelium
11
lung
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2280
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1658
GRCh38
1592
hg19
Lab
2076
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
2321 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
284
50
55
1
7
3
1
1
4
adipose tissue
382
2
2
3
1
liver
166
140
20
2
3
1
1
1
1
kidney
49
23
75
13
6
1
1
1
bone element
84
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