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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
174
single cell RNA-seq
total RNA-seq
102
ATAC-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
317
DNA binding
174
Transcription
135
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
184
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
126
August, 2017
115
August, 2021
93
February, 2021
67
October, 2019
47
February, 2023
47
September, 2023
40
May, 2022
31
May, 2020
29
March, 2020
29
October, 2018
25
November, 2017
23
May, 2019
19
April, 2020
16
April, 2019
16
July, 2019
12
December, 2017
9
October, 2017
8
January, 2021
4
December, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
January, 2018
1
August, 2022
1
January, 2019
1
May, 2021
1
November, 2019
Available data
198
bam
129
tsv
122
tagAlign
101
bed narrowPeak
98
txt
91
fastq
60
bigWig
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
1
bedpe
Organism
780
Homo sapiens
Biosample type
783
tissue
455
primary cell
189
cell line
120
in vitro differentiated cells
7
stem cell
Organ
119
heart
102
liver
99
pancreas
88
bone element
85
kidney
65
connective tissue
64
adipose tissue
50
brain
38
musculature of body
34
eye
25
blood vessel
25
vasculature
23
limb
20
lung
13
epithelium
11
nerve
9
artery
9
spleen
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
695
AMP
47
KPMP
22
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
853
hg19
Lab
631
AMP-T2D consortium
47
KPMP
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
18
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
86
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assay_title!
total RNA-seq
assembly!
GRCh38
BIOSAMPLE
ASSAY
783 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
46
46
7
4
3
1
1
4
liver
70
1
20
1
1
1
3
bone element
84
kidney
7
64
6
1
1
1
subcutaneous abdominal adipose tissue
36
3
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