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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
529
ChIP-seq
161
DNase-seq
122
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
4
FAIRE-seq
1
snATAC-seq
Assay category
529
DNA binding
288
DNA accessibility
16
Transcription
11
3D chromatin structure
9
DNA methylation
Target of assay
438
histone modification
437
histone
239
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
155
October, 2019
147
June, 2019
93
May, 2019
91
August, 2017
65
April, 2019
45
October, 2018
39
May, 2022
36
December, 2017
33
February, 2023
29
July, 2019
27
May, 2020
21
November, 2019
17
November, 2018
13
October, 2017
11
March, 2020
8
February, 2021
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
Available data
777
bed narrowPeak
747
bam
746
bigWig
493
bigBed narrowPeak
197
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
17
tsv
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
847
Homo sapiens
Biosample type
853
tissue
476
primary cell
426
cell line
170
in vitro differentiated cells
3
stem cell
Organ
144
pancreas
138
brain
119
liver
101
heart
92
limb
91
kidney
66
blood vessel
66
vasculature
58
musculature of body
30
eye
29
adipose tissue
29
connective tissue
27
artery
27
nerve
18
ureter
14
spleen
12
bone element
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
851
AMP
2
T1D
Genome assembly (visualization)
917
GRCh38
853
hg19
Lab
810
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
853 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snATAC-seq
tissue
liver
83
2
20
1
1
1
islet of Langerhans
31
1
42
2
1
1
heart left ventricle
29
3
2
1
1
kidney
20
13
1
1
1
body of pancreas
26
2
4
2
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