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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
1065
ChIP-seq
302
ATAC-seq
179
DNase-seq
176
single cell RNA-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1065
DNA binding
513
DNA accessibility
192
Transcription
38
DNA methylation
20
3D chromatin structure
Target of assay
705
histone modification
704
histone
364
narrow histone mark
339
broad histone mark
224
control
138
transcription factor
34
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
263
August, 2017
226
October, 2019
214
August, 2021
163
June, 2019
115
May, 2019
105
February, 2021
94
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
49
May, 2021
47
September, 2023
46
July, 2019
40
May, 2022
37
March, 2020
26
November, 2018
26
November, 2019
24
February, 2018
23
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
1164
bam
1076
bed narrowPeak
963
bigWig
578
bigBed narrowPeak
400
fastq
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
149
tsv
101
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
1949
Homo sapiens
Biosample type
1700
tissue
841
primary cell
549
cell line
258
in vitro differentiated cells
10
stem cell
Organ
258
heart
249
kidney
248
brain
219
pancreas
206
liver
180
connective tissue
126
blood vessel
126
vasculature
115
limb
96
bone element
92
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
35
epithelium
25
spleen
23
embryo
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1868
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
1055
GRCh38
1023
hg19
4
hg18
Lab
1679
AMP-T2D consortium
93
Katalin Susztak, Upenn
82
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
116
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
1958 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
tissue
kidney
27
75
13
64
6
1
1
1
liver
145
20
2
1
1
3
1
1
1
islet of Langerhans
71
68
1
4
7
3
1
1
4
bone element
84
heart left ventricle
35
2
3
18
1
4
1
1
+ See 169 more…
in vitro differentiated cells
adipocyte
67
8
1
1
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
+ See 19 more…
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