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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
860
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
86
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
860
DNA binding
469
DNA accessibility
190
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
587
histone modification
586
histone
307
narrow histone mark
279
broad histone mark
186
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
188
August, 2017
178
August, 2021
163
June, 2019
115
May, 2019
101
February, 2021
82
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
47
September, 2023
46
July, 2019
40
May, 2022
31
March, 2020
26
November, 2018
23
October, 2017
21
November, 2019
18
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
993
bam
938
bed narrowPeak
825
bigWig
555
bigBed narrowPeak
267
fastq
231
tagAlign
207
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
145
tsv
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1691
Homo sapiens
Biosample type
1691
tissue
841
primary cell
545
cell line
258
in vitro differentiated cells
8
stem cell
Organ
258
heart
249
kidney
248
brain
209
pancreas
191
liver
126
blood vessel
126
vasculature
115
limb
96
bone element
91
connective tissue
90
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
25
spleen
19
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1602
AMP
47
KPMP
24
T1D
18
LungMap
Genome assembly (visualization)
911
GRCh38
847
hg19
Lab
1462
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
18
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
1691 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
27
75
13
64
6
1
1
1
liver
145
20
2
1
3
1
1
1
1
islet of Langerhans
71
68
1
7
4
3
1
1
4
bone element
84
heart left ventricle
35
2
3
18
4
1
1
1
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