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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
550
ChIP-seq
177
DNase-seq
158
ATAC-seq
16
WGBS
16
small RNA-seq
Assay category
550
DNA binding
Target of assay
459
histone modification
458
histone
236
narrow histone mark
222
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
147
October, 2019
92
May, 2019
64
April, 2019
64
August, 2017
57
November, 2017
45
October, 2018
36
December, 2017
19
May, 2020
7
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
March, 2020
2
September, 2017
Available data
548
bam
544
bigWig
524
bed narrowPeak
376
bigBed narrowPeak
155
fastq
116
tagAlign
28
bed bed3+
14
bed broadPeak
1
tagAlign bed3+
Organism
544
Homo sapiens
Biosample type
550
tissue
346
cell line
207
primary cell
120
in vitro differentiated cells
3
stem cell
Organ
165
brain
82
liver
78
pancreas
66
heart
57
blood vessel
57
vasculature
47
limb
24
nerve
21
artery
20
kidney
18
adipose tissue
18
connective tissue
12
spleen
5
musculature of body
1
pituitary gland
Project
548
AMP
2
T1D
Genome assembly (visualization)
550
GRCh38
529
hg19
Lab
550
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
550 results
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Clear Filters
ChIP-seq
tissue
liver
75
heart left ventricle
28
body of pancreas
26
islet of Langerhans
25
tibial nerve
24
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