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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
867
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
178
DNA accessibility
16
3D chromatin structure
Date released
163
June, 2019
9
November, 2018
7
March, 2020
5
October, 2019
4
July, 2019
2
August, 2017
2
August, 2021
1
March, 2019
1
November, 2019
Available data
177
bam
177
bed narrowPeak
177
bigBed narrowPeak
177
bigWig
176
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
11
hic
10
bedpe bed3+
10
fastq
1
bedpe
Organism
194
Homo sapiens
Biosample type
194
tissue
41
primary cell
6
cell line
5
in vitro differentiated cells
Organ
69
kidney
40
limb
38
musculature of body
30
heart
27
brain
18
ureter
11
pancreas
6
blood vessel
6
vasculature
5
liver
4
artery
3
eye
2
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
194
AMP
Genome assembly (visualization)
177
GRCh38
172
hg19
Lab
191
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
194 results
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DNase-seq
Hi-C
tissue
heart
18
1
muscle of arm
17
brain
14
kidney
13
1
muscle of leg
13
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