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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1351
ChIP-seq
1150
total RNA-seq
289
ATAC-seq
180
DNase-seq
174
single cell RNA-seq
87
RNA microarray
31
pCHi-C
28
WGBS
28
snATAC-seq
20
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
24
March, 2020
4
October, 2019
1
February, 2021
1
May, 2020
1
May, 2021
Available data
25
tsv
1
bed bed3+
Organism
31
Homo sapiens
Biosample type
25
tissue
17
primary cell
6
cell line
5
in vitro differentiated cells
4
stem cell
Organ
4
eye
3
heart
3
liver
2
brain
2
intestine
2
kidney
2
thymus
1
adipose tissue
1
adrenal gland
1
blood vessel
1
connective tissue
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
musculature of body
1
ovary
1
pancreas
1
small intestine
1
spleen
1
stomach
1
urinary bladder
1
vasculature
Project
30
AMP
1
T1D
Genome assembly (visualization)
1
hg19
Lab
30
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
31 results
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pCHi-C
tissue
islet of Langerhans
4
thymus
2
Ammon's horn
1
adipose tissue
1
adrenal gland
1
+ See 16 more…
cell line
HepG2
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
See all biosamples
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