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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
867
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1037
Transcription
Date released
528
February, 2021
143
May, 2020
120
July, 2018
89
August, 2017
51
August, 2021
39
May, 2021
31
July, 2019
26
May, 2022
25
February, 2020
22
October, 2019
19
November, 2019
13
February, 2023
9
March, 2020
6
April, 2018
2
December, 2019
1
May, 2023
Available data
933
tsv
907
bam
901
bigWig
143
txt
103
fastq
Organism
1123
Homo sapiens
Biosample type
1124
tissue
247
primary cell
136
in vitro differentiated cells
113
cell line
Organ
456
connective tissue
398
adipose tissue
289
pancreas
170
liver
146
bone element
52
kidney
19
eye
17
brain
15
heart
7
blood vessel
7
limb
7
vasculature
5
musculature of body
5
nerve
4
skeleton
3
epithelium
2
artery
1
spinal cord
Project
1117
AMP
7
T1D
Genome assembly (visualization)
902
GRCh38
902
hg19
Lab
1042
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
85
inconsistent ontology term
2
audit script error
BIOSAMPLE
ASSAY
1124 results
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total RNA-seq
RNA microarray
tissue
adipose tissue
382
islet of Langerhans
298
liver
167
bone element
84
bone tissue
58
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