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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
962
total RNA-seq
834
ChIP-seq
210
ATAC-seq
174
single cell RNA-seq
173
DNase-seq
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
962
Transcription
Date released
386
February, 2021
143
May, 2020
120
July, 2018
89
August, 2017
50
August, 2021
39
May, 2021
28
July, 2019
26
May, 2022
22
February, 2020
22
October, 2019
19
November, 2019
9
February, 2023
8
March, 2020
1
May, 2023
Available data
860
tsv
839
bam
833
bigWig
97
fastq
55
txt
Organism
962
Homo sapiens
Biosample type
962
tissue
245
primary cell
136
in vitro differentiated cells
61
cell line
Organ
455
connective tissue
397
adipose tissue
283
pancreas
170
liver
bone element
50
kidney
19
eye
17
brain
15
heart
7
blood vessel
7
limb
vasculature
5
musculature of body
5
nerve
4
skeleton
2
artery
2
epithelium
1
spinal cord
Project
955
AMP
7
T1D
Genome assembly (visualization)
834
GRCh38
834
hg19
Lab
880
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
bone element
vasculature
BIOSAMPLE
ASSAY
962 results
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total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
292
liver
167
kidney
49
subcutaneous adipose tissue
7
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