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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
805
total RNA-seq
374
ChIP-seq
151
DNase-seq
95
ATAC-seq
16
small RNA-seq
11
Hi-C
6
RRBS
2
FAIRE-seq
1
snATAC-seq
Assay category
821
Transcription
374
DNA binding
249
DNA accessibility
11
3D chromatin structure
6
DNA methylation
Target of assay
365
histone
365
histone modification
211
narrow histone mark
154
broad histone mark
9
transcription factor
7
RNA binding protein
Date released
452
February, 2021
170
May, 2020
163
October, 2019
147
June, 2019
114
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
40
November, 2019
38
May, 2021
33
February, 2023
21
May, 2022
20
August, 2017
18
March, 2020
14
October, 2018
6
November, 2017
3
March, 2019
2
January, 2018
1
August, 2021
1
May, 2023
Available data
1648
bam
1647
bigWig
918
tsv
777
bed narrowPeak
493
bigBed narrowPeak
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1461
Homo sapiens
Biosample type
1461
tissue
402
primary cell
179
in vitro differentiated cells
163
cell line
Organ
461
connective tissue
403
adipose tissue
227
pancreas
205
liver
135
brain
113
heart
96
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
59
musculature of body
31
nerve
30
eye
27
artery
18
ureter
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1459
AMP
2
T1D
Genome assembly (visualization)
1539
GRCh38
1461
hg19
Lab
1437
AMP-T2D consortium
20
Karen Mohlke, UNC
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
1
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
1461 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
3
islet of Langerhans
169
8
23
2
1
liver
147
32
20
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
1
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