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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
503
ChIP-seq
161
DNase-seq
109
ATAC-seq
4
FAIRE-seq
Assay category
503
DNA binding
274
DNA accessibility
Target of assay
433
histone modification
432
histone
235
narrow histone mark
197
broad histone mark
70
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
151
October, 2019
147
June, 2019
93
May, 2019
66
August, 2017
65
April, 2019
45
October, 2018
38
May, 2022
36
December, 2017
28
February, 2023
27
May, 2020
20
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
6
November, 2017
3
December, 2018
2
March, 2020
Available data
1648
bam
1647
bigWig
918
tsv
777
bed narrowPeak
493
bigBed narrowPeak
294
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
771
Homo sapiens
Biosample type
777
tissue
400
cell line
288
primary cell
131
in vitro differentiated cells
2
stem cell
Organ
130
brain
121
pancreas
113
liver
96
heart
92
limb
88
kidney
65
blood vessel
65
vasculature
51
musculature of body
30
eye
27
artery
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
775
AMP
2
T1D
Genome assembly (visualization)
843
GRCh38
777
hg19
Lab
739
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
777 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
82
2
20
islet of Langerhans
20
1
37
1
heart left ventricle
29
3
2
kidney
20
13
1
body of pancreas
26
2
4
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