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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
527
ChIP-seq
161
DNase-seq
120
ATAC-seq
16
small RNA-seq
9
RRBS
4
FAIRE-seq
4
Hi-C
1
snATAC-seq
Assay category
911
Transcription
527
DNA binding
286
DNA accessibility
9
DNA methylation
4
3D chromatin structure
Target of assay
436
histone modification
435
histone
237
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
180
August, 2017
170
May, 2020
163
October, 2019
147
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
33
February, 2023
March, 2020
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1639
bam
1636
bigWig
910
tsv
775
bed narrowPeak
493
bigBed narrowPeak
294
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
5
bed bed3
4
hic
2
bedpe bed3+
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1731
Homo sapiens
Biosample type
1737
tissue
627
primary cell
523
cell line
291
in vitro differentiated cells
3
stem cell
Organ
482
connective tissue
424
adipose tissue
407
pancreas
266
liver
143
brain
109
heart
96
limb
92
kidney
70
bone element
68
blood vessel
68
vasculature
57
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1737
AMP
Genome assembly (visualization)
1810
GRCh38
1737
hg19
Lab
1694
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
March, 2020
BIOSAMPLE
ASSAY
1737 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
RRBS
FAIRE-seq
Hi-C
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
266
29
1
40
1
1
2
liver
146
83
2
20
1
1
bone tissue
58
heart left ventricle
2
29
3
2
1
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