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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
753
total RNA-seq
439
ChIP-seq
158
DNase-seq
101
ATAC-seq
13
small RNA-seq
10
Hi-C
8
RRBS
4
FAIRE-seq
1
snATAC-seq
Assay category
766
Transcription
439
DNA binding
264
DNA accessibility
10
3D chromatin structure
8
DNA methylation
Target of assay
388
histone
388
histone modification
203
narrow histone mark
185
broad histone mark
49
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
control
Date released
452
February, 2021
160
August, 2017
157
October, 2019
147
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
53
July, 2019
45
October, 2018
40
November, 2019
38
May, 2021
33
February, 2023
19
May, 2022
16
March, 2020
13
October, 2017
10
November, 2018
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1402
bam
1382
bigWig
766
tsv
664
bed narrowPeak
444
bigBed narrowPeak
231
fastq
193
bed broadPeak
183
bed bed3+
157
bigBed broadPeak
78
tagAlign
10
hic
8
bed bedMethyl
8
bedpe bed3+
8
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1481
Homo sapiens
Biosample type
1487
tissue
615
primary cell
283
in vitro differentiated cells
200
cell line
3
stem cell
Organ
482
connective tissue
424
adipose tissue
413
pancreas
liver
143
brain
113
heart
96
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
61
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1485
AMP
2
T1D
Genome assembly (visualization)
1581
GRCh38
1487
hg19
Lab
1464
AMP-T2D consortium
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
liver
BIOSAMPLE
ASSAY
1487 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
266
31
1
42
2
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
1
body of pancreas
2
26
2
4
2
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