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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
865
ChIP-seq
259
ATAC-seq
177
DNase-seq
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
Transcription
865
DNA binding
468
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
591
histone modification
590
histone
307
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
218
October, 2019
195
August, 2017
162
June, 2019
115
May, 2019
82
November, 2017
81
February, 2023
80
April, 2019
74
October, 2018
73
August, 2021
50
May, 2020
48
December, 2017
39
May, 2022
30
July, 2019
29
March, 2020
26
November, 2018
23
October, 2017
20
November, 2019
11
February, 2021
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
980
bam
940
bed narrowPeak
812
bigWig
560
bigBed narrowPeak
274
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
24
tsv
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1411
Homo sapiens
Biosample type
1420
tissue
609
primary cell
491
cell line
232
in vitro differentiated cells
7
stem cell
Organ
242
brain
214
pancreas
187
liver
184
kidney
164
heart
120
blood vessel
120
vasculature
114
limb
89
connective tissue
88
adipose tissue
74
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
bone element
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
Project
1386
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
897
GRCh38
833
hg19
Lab
1257
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
1420 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
liver
145
20
2
3
1
1
1
islet of Langerhans
71
68
1
7
4
3
1
1
4
kidney
27
75
13
6
1
1
1
heart left ventricle
35
2
3
4
1
1
1
body of pancreas
35
4
4
2
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