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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
905
ChIP-seq
259
ATAC-seq
177
DNase-seq
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
Transcription
905
DNA binding
440
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
218
October, 2019
195
August, 2017
162
June, 2019
115
May, 2019
82
November, 2017
80
April, 2019
79
February, 2023
74
October, 2018
67
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
38
May, 2022
30
July, 2019
29
March, 2020
26
November, 2018
23
October, 2017
20
November, 2019
11
February, 2021
11
May, 2023
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
May, 2021
Available data
980
bam
980
bed narrowPeak
852
bigWig
560
bigBed narrowPeak
274
fastq
238
tagAlign
212
bed broadPeak
203
bed bed3+
175
bigBed broadPeak
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
24
tsv
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1424
Homo sapiens
Biosample type
1432
tissue
553
primary cell
491
cell line
232
in vitro differentiated cells
7
stem cell
Organ
242
brain
204
heart
203
pancreas
187
liver
178
kidney
120
blood vessel
120
vasculature
114
limb
89
connective tissue
88
adipose tissue
73
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
bone element
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
Project
1418
AMP
14
T1D
Genome assembly (visualization)
937
GRCh38
832
hg19
Lab
1255
AMP-T2D consortium
76
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
assay_slims!
Transcription
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
1432 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
liver
145
20
2
3
1
1
1
islet of Langerhans
71
68
1
4
3
1
1
4
kidney
27
75
13
1
1
1
heart left ventricle
35
2
3
4
1
1
1
body of pancreas
35
4
4
2
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