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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
947
total RNA-seq
689
ChIP-seq
257
ATAC-seq
175
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
23
pCHi-C
18
WGBS
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
RNA microarray
3
snDrop-seq
Assay category
1137
Transcription
689
DNA binding
463
DNA accessibility
24
DNA methylation
16
3D chromatin structure
Target of assay
467
histone
467
histone modification
257
narrow histone mark
210
broad histone mark
158
control
66
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
August, 2017
240
October, 2019
229
August, 2021
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
39
November, 2019
38
March, 2020
26
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1733
bam
1551
bigWig
984
tsv
874
bed narrowPeak
538
bigBed narrowPeak
202
fastq
186
bed broadPeak
179
tagAlign
178
bed bed3+
175
bigBed broadPeak
73
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2360
Homo sapiens
Biosample type
2362
tissue
975
primary cell
570
cell line
211
in vitro differentiated cells
9
stem cell
Organ
489
connective tissue
430
adipose tissue
358
pancreas
307
liver
299
kidney
273
heart
262
brain
133
blood vessel
133
vasculature
121
limb
74
bone element
73
artery
56
eye
55
musculature of body
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
2265
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1657
GRCh38
1571
hg19
Lab
2050
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
2362 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
RNA microarray
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
209
29
68
7
4
3
1
4
liver
167
97
20
2
1
1
1
1
kidney
49
27
75
13
64
6
1
1
1
heart left ventricle
3
35
2
3
18
1
4
1
1
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