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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1032
total RNA-seq
865
ChIP-seq
247
ATAC-seq
177
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1222
Transcription
865
DNA binding
456
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
591
histone modification
590
histone
307
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
453
February, 2021
284
August, 2017
240
October, 2019
229
August, 2021
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
87
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
39
November, 2019
38
March, 2020
26
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1895
bam
1729
bigWig
1073
tsv
932
bed narrowPeak
560
bigBed narrowPeak
377
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
69
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2621
Homo sapiens
Biosample type
2630
tissue
1034
primary cell
570
cell line
279
in vitro differentiated cells
9
stem cell
Organ
546
connective tissue
505
pancreas
487
adipose tissue
361
liver
299
kidney
273
heart
262
brain
133
blood vessel
133
vasculature
121
limb
81
musculature of body
74
bone element
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
2533
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1807
GRCh38
1739
hg19
Lab
2318
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
organ_slims!
skeleton
BIOSAMPLE
ASSAY
2630 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
298
71
68
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
1
kidney
49
27
75
13
64
6
1
1
1
heart left ventricle
3
35
2
3
18
4
1
1
1
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