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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
388
ChIP-seq
176
single cell RNA-seq
144
total RNA-seq
127
ATAC-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
20
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
GRO-seq
3
snDrop-seq
2
Capture-C
1
DNase-seq
Assay category
388
DNA binding
320
Transcription
160
DNA accessibility
22
DNA methylation
20
3D chromatin structure
Target of assay
210
control
167
histone
167
histone modification
87
narrow histone mark
80
broad histone mark
13
transcription factor
6
RNA binding protein
2
nucleotide modification
Date released
177
August, 2021
145
August, 2017
97
February, 2021
85
October, 2019
76
February, 2023
66
May, 2022
50
May, 2021
47
September, 2023
37
March, 2020
31
May, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2019
19
April, 2020
16
April, 2019
16
July, 2019
13
December, 2017
9
October, 2017
8
January, 2021
5
December, 2019
5
February, 2018
5
January, 2018
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
January, 2019
1
November, 2019
Available data
223
bam
163
tsv
160
txt
144
tagAlign
112
fastq
105
bed narrowPeak
75
bigWig
22
bed broadPeak
17
bedpe bed3+
15
hic
10
bed bed3
9
bed bedMethyl
9
bigBed bedMethyl
8
bigBed narrowPeak
7
bed bed3+
7
bed bedgraph
6
csv
2
ibed
1
bedpe
Organism
1036
Homo sapiens
Biosample type
918
tissue
552
primary cell
198
cell line
121
in vitro differentiated cells
7
stem cell
Organ
134
kidney
124
liver
122
heart
120
pancreas
110
connective tissue
92
bone element
67
adipose tissue
62
brain
53
eye
40
musculature of body
28
blood vessel
28
vasculature
26
limb
20
lung
19
epithelium
12
nerve
11
artery
9
spleen
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
944
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
2031
hg19
3
hg18
Lab
751
AMP-T2D consortium
99
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
101
inconsistent ontology term
11
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
organ_slims!
embryo
BIOSAMPLE
ASSAY
1039 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
GRO-seq
snDrop-seq
Capture-C
DNase-seq
tissue
islet of Langerhans
46
32
46
4
7
3
1
1
4
kidney
7
64
49
6
1
1
1
liver
70
1
20
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
36
3
+ See 82 more…
in vitro differentiated cells
embryonic stem cell
38
5
6
1
adipocyte
19
1
8
1
neural progenitor cell
8
cardiomyocytes (cardiac muscle cell)
2
2
2
chondrocyte
5
+ See 15 more…
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