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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
total RNA-seq
84
RNA microarray
11
ATAC-seq
9
ChIP-seq
5
pCHi-C
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
92
Transcription
12
DNA accessibility
9
DNA binding
4
3D chromatin structure
Target of assay
4
histone
4
histone modification
4
narrow histone mark
3
transcription factor
2
control
Date released
102
February, 2021
68
May, 2021
9
March, 2020
8
October, 2019
6
November, 2019
5
February, 2023
4
December, 2017
2
December, 2019
1
February, 2020
1
June, 2019
Available data
105
bam
96
bigWig
93
tsv
85
txt
17
bed narrowPeak
6
bedpe bed3+
4
fastq
4
hic
3
bed bed3+
3
tagAlign
2
ibed
1
bed bedgraph
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
206
Homo sapiens
Biosample type
115
in vitro differentiated cells
92
cell line
91
tissue
54
primary cell
1
stem cell
Organ
84
bone element
6
embryo
5
connective tissue
5
epithelium
3
brain
1
adipose tissue
1
limb
1
musculature of body
1
stomach
1
urinary bladder
Project
206
AMP
Genome assembly (visualization)
112
hg19
103
GRCh38
Lab
205
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
206
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
206 results
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total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
pCHi-C
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
cardiac precursors (cardiac muscle cell)
19
1
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Hepatic endoderm
4
+ See 8 more…
tissue
bone element
84
adipose tissue(adipose white tissue)
1
bladder (urinary bladder)
1
brodmann area 43
1
cerebellum (Hemisphere)
1
+ See 3 more…
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