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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1065
ChIP-seq
301
ATAC-seq
179
DNase-seq
115
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
27
WGBS
20
Hi-C
11
RRBS
8
pCHi-C
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
2
Capture-C
Assay category
1065
DNA binding
512
DNA accessibility
186
Transcription
38
DNA methylation
20
3D chromatin structure
Target of assay
705
histone modification
704
histone
364
narrow histone mark
339
broad histone mark
224
control
138
transcription factor
34
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
263
August, 2017
240
October, 2019
165
August, 2021
163
June, 2019
115
May, 2019
107
February, 2023
97
February, 2021
91
December, 2017
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
55
May, 2021
50
May, 2020
47
September, 2023
30
July, 2019
26
November, 2018
26
November, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
March, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
January, 2018
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
1
August, 2018
1
August, 2022
1
December, 2019
Available data
2198
bam
1991
bigWig
tsv
1076
bed narrowPeak
578
bigBed narrowPeak
518
fastq
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
1915
Homo sapiens
Biosample type
1661
tissue
818
primary cell
543
cell line
263
in vitro differentiated cells
6
stem cell
Organ
287
kidney
242
brain
233
pancreas
222
liver
182
connective tissue
162
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
90
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
34
epithelium
24
spleen
23
embryo
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1827
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1040
GRCh38
1007
hg19
4
hg18
Lab
1559
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
113
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
BIOSAMPLE
ASSAY
1924 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
GRO-seq
MeRIP-seq
Capture-C
tissue
kidney
27
75
13
49
59
6
1
1
1
liver
145
20
2
20
1
3
1
1
islet of Langerhans
71
67
1
31
7
3
1
4
1
4
bone element
84
heart left ventricle
35
2
3
4
1
1
+ See 145 more…
in vitro differentiated cells
adipocyte
67
8
1
1
1
embryonic stem cell
40
6
5
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
+ See 19 more…
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