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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1114
total RNA-seq
1065
ChIP-seq
299
ATAC-seq
179
DNase-seq
163
single cell RNA-seq
30
pCHi-C
27
WGBS
27
snATAC-seq
20
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
2
Capture-C
Assay category
1293
Transcription
1065
DNA binding
509
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
705
histone modification
704
histone
364
narrow histone mark
339
broad histone mark
224
control
138
transcription factor
34
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
482
February, 2021
352
August, 2017
250
October, 2019
214
August, 2021
193
May, 2020
172
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
104
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
59
May, 2022
48
March, 2020
47
September, 2023
45
November, 2019
39
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
2198
bam
1991
bigWig
1207
tsv
1076
bed narrowPeak
578
bigBed narrowPeak
518
fastq
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
2962
Homo sapiens
Biosample type
2580
tissue
1088
primary cell
661
cell line
391
in vitro differentiated cells
10
stem cell
Organ
644
connective tissue
502
pancreas
489
adipose tissue
376
liver
274
heart
265
brain
237
kidney
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
70
bone element
56
eye
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2874
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
2084
GRCh38
2048
hg19
4
hg18
Lab
2671
AMP-T2D consortium
93
Kyle Gaulton, UCSD
85
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
121
inconsistent ontology term
27
inconsistent control
5
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
files.file_type!
txt
BIOSAMPLE
ASSAY
2971 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
RNA microarray
snDrop-seq
Capture-C
tissue
islet of Langerhans
292
71
68
1
4
7
3
1
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
2
1
1
3
1
1
1
kidney
27
75
13
51
6
1
1
1
heart left ventricle
3
35
2
3
18
1
4
1
1
+ See 175 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
40
5
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
+ See 29 more…
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