Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1173
total RNA-seq
361
ChIP-seq
302
ATAC-seq
179
DNase-seq
176
single cell RNA-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1365
Transcription
513
DNA accessibility
361
DNA binding
38
DNA methylation
20
3D chromatin structure
Target of assay
705
histone modification
histone
364
narrow histone mark
339
broad histone mark
224
control
138
transcription factor
34
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
257
August, 2021
192
August, 2017
166
May, 2020
163
June, 2019
151
May, 2021
120
July, 2018
111
February, 2023
82
October, 2019
77
July, 2019
66
May, 2022
62
December, 2017
47
September, 2023
46
March, 2020
45
November, 2019
44
October, 2018
26
May, 2019
26
November, 2018
25
February, 2020
23
February, 2018
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
1
January, 2019
Available data
1654
bam
1427
bigWig
1207
tsv
514
bed narrowPeak
380
fastq
254
bigBed narrowPeak
210
bed bed3+
179
bed broadPeak
177
bigBed broadPeak
160
txt
66
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
Organism
2424
Homo sapiens
Biosample type
2145
tissue
851
primary cell
624
cell line
282
in vitro differentiated cells
8
stem cell
Organ
574
connective tissue
457
adipose tissue
434
pancreas
295
liver
279
kidney
214
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
24
epithelium
20
lung
19
nerve
19
spleen
18
ureter
17
embryo
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2332
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1548
GRCh38
1538
hg19
4
hg18
Lab
2081
AMP-T2D consortium
142
Katalin Susztak, Upenn
79
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
202
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
23
missing controlled_by
Audit category:
10
inconsistent control read length
target.investigated_as!
histone
BIOSAMPLE
ASSAY
2427 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
tissue
islet of Langerhans
298
20
68
1
4
7
3
1
1
4
adipose tissue
382
1
3
1
3
liver
167
81
20
2
1
1
3
1
1
1
kidney
49
7
75
13
64
6
1
1
1
bone element
84
+ See 118 more…
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
30
8
1
1
embryonic stem cell
7
18
6
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 31 more…
See all biosamples
Download