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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
Assay category
138
DNA binding
Target of assay
705
histone modification
704
histone
364
narrow histone mark
339
broad histone mark
224
control
138
transcription factor
34
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
45
August, 2017
42
December, 2017
16
May, 2021
15
October, 2018
7
November, 2018
6
April, 2019
4
May, 2019
3
December, 2018
Available data
126
bam
125
bigWig
112
fastq
102
bed narrowPeak
67
bigBed narrowPeak
19
bed bed3+
4
tagAlign
Organism
138
Homo sapiens
Biosample type
361
cell line
89
tissue
49
in vitro differentiated cells
10
primary cell
Organ
41
liver
39
connective tissue
18
pancreas
17
adipose tissue
7
heart
6
spleen
3
blood vessel
3
embryo
3
epithelium
3
vasculature
1
artery
1
kidney
Project
138
AMP
Genome assembly (visualization)
125
GRCh38
125
hg19
Lab
126
AMP-T2D consortium
12
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
10
inconsistent control read length
BIOSAMPLE
ASSAY
138 results
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ChIP-seq
tissue
liver
37
white adipose tissue
12
body of pancreas
9
islet of Langerhans
7
spleen
6
+ See 10 more…
in vitro differentiated cells
adipocyte
22
embryonic stem cell
12
cardiomyocytes
3
pancreatic endoderm
3
Posterior foregut
2
+ See 4 more…
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