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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
ChIP-seq
261
single cell RNA-seq
253
ATAC-seq
232
total RNA-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
42
pCHi-C
25
Hi-C
21
RRBS
5
DNase-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
493
Transcription
389
DNA binding
347
DNA accessibility
80
DNA methylation
25
3D chromatin structure
Target of assay
216
control
173
histone
173
histone modification
87
broad histone mark
86
narrow histone mark
2
RNA binding protein
2
nucleotide modification
2
transcription factor
Date released
200
May, 2022
166
August, 2021
148
February, 2023
143
August, 2017
139
February, 2021
133
May, 2020
93
October, 2019
59
May, 2021
56
September, 2020
47
September, 2023
32
March, 2020
29
July, 2019
29
October, 2018
28
November, 2017
25
February, 2020
24
May, 2019
19
April, 2020
16
April, 2019
16
January, 2021
12
December, 2017
9
October, 2017
8
June, 2019
5
November, 2018
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
3
October, 2022
2
January, 2018
1
August, 2022
1
January, 2019
1
November, 2019
1
September, 2018
Available data
288
bam
277
fastq
177
tsv
157
txt
154
bigWig
153
zippedFastqFolder
135
bed narrowPeak
124
tagAlign
26
bed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
16
hic
14
bedpe bed3+
10
bigBed narrowPeak
8
bed bed3+
8
csv
5
bed bed3
4
bigBed broadPeak
4
hdf5
3
cool
1
bedpe
1
tar
Organism
1467
Homo sapiens
Biosample type
918
tissue
552
primary cell
198
cell line
129
in vitro differentiated cells
7
stem cell
Organ
273
pancreas
196
epithelium
142
kidney
126
liver
125
heart
93
bone element
74
connective tissue
69
brain
66
adipose tissue
55
eye
43
musculature of body
43
vasculature
41
blood vessel
26
limb
20
lung
12
nerve
11
artery
10
vein
9
spleen
8
blood
8
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1037
AMP
314
HPAP
53
T1D
47
KPMP
19
LungMap
Genome assembly (visualization)
2383
hg19
GRCh38
Lab
863
AMP-T2D consortium
314
Klaus Kaestner, Upenn
111
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
105
inconsistent ontology term
40
audit script error
Audit category:
1
missing controlled_by
assembly!
GRCh38
BIOSAMPLE
ASSAY
1470 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
46
46
32
7
4
3
1
1
4
kidney
7
64
49
6
1
1
1
liver
70
1
20
20
3
1
1
1
bone element
84
subcutaneous abdominal adipose tissue
36
3
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primary cell
Langerhans cell
85
48
pancreatic alpha cell
6
22
42
31
1
pancreatic beta cell
6
13
11
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
33
2
2
1
+ See 62 more…
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