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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1052
total RNA-seq
757
ChIP-seq
207
ATAC-seq
204
DNase-seq
100
single cell RNA-seq
18
small RNA-seq
16
WGBS
1
Hi-C
Assay category
1170
Transcription
757
DNA binding
411
DNA accessibility
16
DNA methylation
1
3D chromatin structure
Target of assay
657
histone modification
656
histone
338
narrow histone mark
318
broad histone mark
97
transcription factor
31
RNA binding protein
6
control
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
454
February, 2021
210
June, 2019
207
May, 2020
200
August, 2017
187
May, 2021
183
October, 2019
164
July, 2018
96
May, 2019
79
July, 2019
72
September, 2018
67
August, 2021
64
April, 2019
63
November, 2017
49
April, 2018
47
October, 2018
39
November, 2019
36
December, 2017
35
February, 2023
22
November, 2018
14
October, 2017
12
May, 2023
9
March, 2020
7
August, 2020
7
September, 2017
6
January, 2019
6
November, 2020
5
December, 2019
3
August, 2018
3
December, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
2228
bam
2191
bigWig
1169
tsv
1104
bed narrowPeak
660
bigBed narrowPeak
509
fastq
236
bed broadPeak
234
bed bed3+
221
bigBed broadPeak
214
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
bed bed3
1
hic
1
tagAlign bed3+
Organism
2349
Homo sapiens
Biosample type
1819
tissue
536
primary cell
464
cell line
265
in vitro differentiated cells
3
stem cell
Organ
578
pancreas
512
connective tissue
424
adipose tissue
249
liver
225
epithelium
217
brain
193
kidney
161
heart
127
vasculature
123
blood vessel
96
limb
66
bone element
64
artery
53
musculature of body
31
nerve
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
2162
AMP
182
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
2383
hg19
2355
GRCh38
Lab
2086
AMP-T2D consortium
180
Kyle Gaulton, UCSD
75
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
40
inconsistent ontology term
27
inconsistent control
Audit category:
69
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
2355 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue
382
1
2
islet of Langerhans
266
25
22
1
liver
147
75
2
1
kidney
20
75
13
bone tissue
58
+ See 142 more…
primary cell
monocyte
53
84
13
pancreatic alpha cell
10
7
13
12
pancreatic beta cell
10
7
10
12
pancreatic ductal cell
4
13
4
10
pancreatic acinar cell
4
8
5
12
+ See 75 more…
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