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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1057
total RNA-seq
964
ChIP-seq
206
DNase-seq
148
ATAC-seq
100
single cell RNA-seq
18
small RNA-seq
17
WGBS
5
FAIRE-seq
1
pCHi-C
Assay category
1175
Transcription
964
DNA binding
359
DNA accessibility
17
DNA methylation
Target of assay
669
histone modification
668
histone
346
narrow histone mark
322
broad histone mark
199
control
99
transcription factor
33
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
455
February, 2021
283
May, 2020
228
August, 2017
218
June, 2019
217
October, 2019
187
May, 2021
164
July, 2018
120
May, 2019
82
July, 2019
79
April, 2019
78
November, 2017
76
October, 2018
72
September, 2018
49
April, 2018
48
December, 2017
39
November, 2019
26
November, 2018
24
May, 2022
15
October, 2017
11
September, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
November, 2020
5
December, 2019
4
August, 2021
3
August, 2018
3
June, 2018
1
March, 2019
Available data
2516
bam
2345
bigWig
1346
tsv
1239
bed narrowPeak
786
fastq
670
bigBed narrowPeak
338
tagAlign
262
bed broadPeak
242
bed bed3+
225
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
2509
Homo sapiens
Biosample type
1907
tissue
609
primary cell
582
cell line
291
in vitro differentiated cells
3
stem cell
Organ
623
pancreas
534
connective tissue
442
adipose tissue
300
liver
243
brain
242
epithelium
144
heart
129
kidney
119
vasculature
114
blood vessel
114
limb
66
bone element
57
musculature of body
42
nerve
36
artery
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
2334
AMP
182
T1D
Genome assembly (visualization)
2228
GRCh38
2222
hg19
Lab
2311
AMP-T2D consortium
204
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
49
inconsistent ontology term
27
inconsistent control
Audit category:
69
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
2516 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
adipose tissue
381
2
2
islet of Langerhans
272
30
1
38
1
liver
147
122
2
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
+ See 140 more…
primary cell
monocyte
53
84
15
pancreatic beta cell
10
13
7
12
pancreatic alpha cell
10
13
6
12
pancreatic ductal cell
4
13
4
10
pancreatic acinar cell
4
8
5
12
+ See 74 more…
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