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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1081
total RNA-seq
203
single cell RNA-seq
20
pCHi-C
18
small RNA-seq
13
ATAC-seq
6
WGBS
3
snDrop-seq
2
RNA microarray
Assay category
1302
Transcription
13
DNA accessibility
6
DNA methylation
Target of assay
3
control
Date released
459
February, 2021
188
May, 2020
164
July, 2018
99
August, 2021
90
May, 2021
89
August, 2017
65
July, 2019
49
April, 2018
28
March, 2020
26
September, 2018
25
February, 2020
19
November, 2019
16
February, 2023
10
October, 2019
7
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
Available data
2516
bam
2345
bigWig
1346
tsv
1239
bed narrowPeak
786
fastq
670
bigBed narrowPeak
338
tagAlign
262
bed broadPeak
242
bed bed3+
225
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
1346
Homo sapiens
Biosample type
1076
tissue
270
primary cell
131
in vitro differentiated cells
119
cell line
4
stem cell
Organ
472
connective tissue
401
adipose tissue
383
pancreas
159
liver
119
epithelium
115
heart
58
bone element
26
brain
18
kidney
16
blood vessel
16
vasculature
9
musculature of body
7
limb
6
artery
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
1244
AMP
96
T1D
6
HPAP
Genome assembly (visualization)
1170
hg19
1169
GRCh38
Lab
1243
AMP-T2D consortium
96
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
20
inconsistent ontology term
7
audit script error
BIOSAMPLE
ASSAY
1346 results
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total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
WGBS
snDrop-seq
RNA microarray
tissue
adipose tissue
381
1
islet of Langerhans
267
1
liver
147
1
1
bone tissue
58
heart left ventricle
3
18
1
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primary cell
monocyte
53
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
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