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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
total RNA-seq
725
ChIP-seq
177
DNase-seq
64
ATAC-seq
17
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
923
Transcription
725
DNA binding
245
DNA accessibility
17
DNA methylation
Target of assay
468
histone modification
467
histone
244
narrow histone mark
223
broad histone mark
168
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
186
October, 2019
170
August, 2017
163
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
64
July, 2019
51
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1910
bam
1735
bigWig
1080
tsv
946
bed narrowPeak
561
bigBed narrowPeak
381
fastq
238
tagAlign
213
bed broadPeak
208
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1903
Homo sapiens
Biosample type
1907
tissue
609
primary cell
582
cell line
291
in vitro differentiated cells
3
stem cell
Organ
498
connective tissue
440
adipose tissue
429
pancreas
288
liver
226
brain
132
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1908
AMP
2
T1D
Genome assembly (visualization)
1706
GRCh38
1651
hg19
Lab
1885
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
1910 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
272
30
1
38
1
liver
147
122
2
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
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stem cell
hESC
3
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