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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
832
ChIP-seq
258
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
2
RRBS
Assay category
1227
Transcription
832
DNA binding
292
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
558
histone modification
557
histone
294
narrow histone mark
263
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
253
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
80
April, 2019
76
November, 2017
74
October, 2018
66
May, 2022
63
July, 2019
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
25
February, 2020
19
April, 2020
19
October, 2017
15
May, 2023
11
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2496
Homo sapiens
Biosample type
2499
tissue
1029
primary cell
602
cell line
393
in vitro differentiated cells
10
stem cell
Organ
542
connective tissue
483
adipose tissue
479
pancreas
357
liver
239
heart
230
kidney
228
brain
158
bone element
127
blood vessel
127
vasculature
85
limb
69
artery
53
eye
41
nerve
34
musculature of body
22
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2402
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1612
GRCh38
1550
hg19
Lab
2189
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bed bedMethyl
bed broadPeak
BIOSAMPLE
ASSAY
2499 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
RRBS
tissue
islet of Langerhans
298
65
66
7
4
3
1
4
1
adipose tissue
382
2
3
1
1
liver
167
145
20
1
1
1
1
3
kidney
49
27
75
64
6
1
1
bone element
84
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