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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
89
ChIP-seq
10
WGBS
3
ATAC-seq
3
RRBS
Assay category
103
Transcription
89
DNA binding
13
DNA methylation
3
DNA accessibility
Target of assay
67
control
18
transcription factor
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
129
August, 2017
27
October, 2018
12
December, 2017
9
November, 2018
6
April, 2018
6
May, 2022
6
September, 2017
5
October, 2017
4
December, 2018
2
July, 2018
1
January, 2019
1
March, 2019
Available data
1907
bam
1732
bigWig
1076
tsv
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
207
Homo sapiens
Biosample type
320
primary cell
208
tissue
80
cell line
48
in vitro differentiated cells
2
stem cell
Organ
136
pancreas
34
adipose tissue
34
connective tissue
22
liver
10
spleen
4
brain
2
musculature of body
Project
208
AMP
Genome assembly (visualization)
131
GRCh38
125
hg19
Lab
200
AMP-T2D consortium
6
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
22
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
208 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
RRBS
tissue
islet of Langerhans
103
16
2
liver
17
1
1
white adipose tissue
12
body of pancreas
8
2
spleen
8
2
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