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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1015
total RNA-seq
262
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
38
ATAC-seq
28
snATAC-seq
27
WGBS
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1205
Transcription
262
DNA binding
67
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
160
control
85
histone
85
histone modification
50
broad histone mark
35
narrow histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
218
August, 2017
166
May, 2020
165
August, 2021
120
July, 2018
October, 2019
70
July, 2019
47
September, 2023
40
May, 2021
38
March, 2020
32
February, 2023
29
October, 2018
28
May, 2022
25
February, 2020
24
November, 2017
22
May, 2019
20
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
12
December, 2017
11
October, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1721
bam
1572
bigWig
1068
tsv
bed narrowPeak
514
bigBed narrowPeak
377
fastq
209
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1699
Homo sapiens
Biosample type
1702
tissue
780
primary cell
256
in vitro differentiated cells
243
cell line
8
stem cell
Organ
532
connective tissue
474
adipose tissue
379
pancreas
247
liver
150
bone element
144
kidney
137
heart
62
brain
31
musculature of body
28
blood vessel
28
vasculature
20
lung
11
spleen
9
limb
8
skeleton
6
artery
5
eye
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1607
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
966
GRCh38
966
hg19
Lab
1492
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
October, 2019
BIOSAMPLE
ASSAY
1702 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
adipose tissue
382
1
1
3
1
islet of Langerhans
284
30
18
7
3
1
4
liver
166
63
1
3
1
1
1
1
kidney
49
5
64
11
6
1
1
bone element
84
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