Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
103
total RNA-seq
27
ATAC-seq
10
WGBS
3
RRBS
Assay category
113
DNA binding
103
Transcription
27
DNA accessibility
13
DNA methylation
Target of assay
67
control
23
histone modification
23
transcription factor
22
histone
12
narrow histone mark
10
broad histone mark
2
RNA binding protein
Date released
153
August, 2017
27
October, 2018
24
May, 2022
12
December, 2017
11
October, 2017
9
November, 2018
6
April, 2018
6
September, 2017
4
December, 2018
2
July, 2018
1
January, 2019
1
March, 2019
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
255
Homo sapiens
Biosample type
366
primary cell
256
tissue
126
in vitro differentiated cells
80
cell line
4
stem cell
Organ
170
pancreas
35
adipose tissue
35
connective tissue
34
liver
11
spleen
4
brain
2
musculature of body
Project
256
AMP
Genome assembly (visualization)
173
hg19
161
GRCh38
Lab
230
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
23
missing controlled_by
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
256 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
tissue
islet of Langerhans
28
103
20
liver
29
1
1
body of pancreas
8
4
2
white adipose tissue
12
spleen
8
1
2
+ See 8 more…
See all biosamples
Download