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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
955
total RNA-seq
490
ChIP-seq
128
ATAC-seq
107
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
16
small RNA-seq
13
Hi-C
11
RRBS
3
snDrop-seq
2
snATAC-seq
1
DNase-seq
Assay category
1078
Transcription
490
DNA binding
131
DNA accessibility
38
DNA methylation
13
3D chromatin structure
Target of assay
281
histone modification
280
histone
201
narrow histone mark
185
control
79
broad histone mark
24
transcription factor
3
RNA binding protein
Date released
545
February, 2021
262
August, 2017
195
October, 2019
193
May, 2020
120
July, 2018
99
August, 2021
77
February, 2023
75
July, 2019
40
March, 2020
40
November, 2019
38
May, 2021
29
October, 2018
25
February, 2020
25
November, 2017
22
May, 2019
16
April, 2019
16
October, 2017
12
December, 2017
9
November, 2018
6
April, 2018
6
September, 2017
4
December, 2018
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
January, 2019
1
May, 2023
Available data
1882
bam
1711
bigWig
1075
tsv
842
bed narrowPeak
bigBed narrowPeak
351
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
94
txt
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1862
Homo sapiens
Biosample type
1864
tissue
415
primary cell
323
in vitro differentiated cells
260
cell line
8
stem cell
Organ
537
connective tissue
478
adipose tissue
380
pancreas
272
liver
185
heart
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
23
kidney
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1860
AMP
4
T1D
Genome assembly (visualization)
1219
hg19
1186
GRCh38
Lab
1864
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
23
missing controlled_by
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
1864 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
snDrop-seq
snATAC-seq
DNase-seq
tissue
islet of Langerhans
286
71
34
4
1
1
1
adipose tissue
382
1
2
3
1
liver
147
107
1
3
1
1
1
1
bone element
84
bone tissue
58
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