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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
110
ChIP-seq
20
ATAC-seq
4
WGBS
3
small RNA-seq
1
DNase-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
110
DNA binding
21
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
60
histone modification
59
histone
46
control
41
narrow histone mark
18
broad histone mark
4
transcription factor
Date released
193
May, 2020
48
August, 2017
40
May, 2022
12
December, 2017
8
July, 2019
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
288
bam
265
bigWig
154
tsv
113
bed narrowPeak
83
fastq
70
tagAlign
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
312
Homo sapiens
Biosample type
312
tissue
108
cell line
12
primary cell
1
in vitro differentiated cells
Organ
537
connective tissue
478
adipose tissue
443
pancreas
312
liver
212
kidney
185
heart
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
312
AMP
Genome assembly (visualization)
219
hg19
189
GRCh38
Lab
272
AMP-T2D consortium
40
Karen Mohlke, UNC
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
312 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
107
20
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
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