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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
927
total RNA-seq
645
ChIP-seq
220
ATAC-seq
168
DNase-seq
118
single cell RNA-seq
87
RNA microarray
24
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
8
snATAC-seq
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1061
Transcription
645
DNA binding
398
DNA accessibility
25
DNA methylation
16
3D chromatin structure
Target of assay
517
histone
517
histone modification
279
narrow histone mark
238
broad histone mark
120
control
10
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
118
July, 2018
115
May, 2019
109
August, 2017
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
42
May, 2022
40
November, 2019
39
May, 2021
36
March, 2020
25
February, 2020
16
October, 2018
15
May, 2023
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1905
bam
1730
bigWig
1076
tsv
942
bed narrowPeak
561
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2262
Homo sapiens
Biosample type
2263
tissue
319
primary cell
253
in vitro differentiated cells
224
cell line
4
stem cell
Organ
504
connective tissue
445
adipose tissue
278
liver
273
heart
262
pancreas
253
brain
252
kidney
158
bone element
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
2263
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1537
GRCh38
1459
hg19
Lab
2070
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
91
inconsistent ontology term
9
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
2263 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
snATAC-seq
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
188
41
37
4
3
1
1
4
liver
167
78
20
1
1
2
1
1
kidney
49
27
75
13
17
1
1
6
1
bone element
84
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