Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
647
ChIP-seq
230
ATAC-seq
168
DNase-seq
100
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
17
WGBS
16
Hi-C
8
RRBS
5
pCHi-C
4
MeRIP-seq
2
FAIRE-seq
Assay category
647
DNA binding
428
DNA accessibility
171
Transcription
25
DNA methylation
16
3D chromatin structure
Target of assay
519
histone
519
histone modification
281
narrow histone mark
238
broad histone mark
120
control
10
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
234
October, 2019
163
June, 2019
130
August, 2021
115
May, 2019
109
August, 2017
93
February, 2021
91
February, 2023
82
November, 2017
80
April, 2019
50
May, 2020
47
September, 2023
42
May, 2022
30
July, 2019
21
November, 2019
19
April, 2020
16
October, 2018
15
May, 2023
12
March, 2020
8
January, 2021
6
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1907
bam
1732
bigWig
tsv
944
bed narrowPeak
561
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1379
Homo sapiens
Biosample type
1381
tissue
535
primary cell
137
in vitro differentiated cells
121
cell line
2
stem cell
Organ
287
kidney
230
brain
162
heart
124
liver
119
blood vessel
119
vasculature
115
limb
114
pancreas
100
bone element
73
musculature of body
69
artery
51
eye
47
connective tissue
46
adipose tissue
38
nerve
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1284
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
719
GRCh38
640
hg19
Lab
1096
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
88
inconsistent ontology term
2
audit script error
files.file_type!
fastq
tsv
BIOSAMPLE
ASSAY
1381 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
MeRIP-seq
FAIRE-seq
tissue
kidney
27
75
13
49
59
6
1
1
1
islet of Langerhans
43
47
25
7
3
1
4
4
liver
78
20
20
1
2
1
bone element
84
heart left ventricle
35
2
3
4
1
1
+ See 143 more…
See all biosamples
Download