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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
78
ChIP-seq
20
ATAC-seq
3
WGBS
3
small RNA-seq
1
DNase-seq
1
Hi-C
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
78
DNA binding
21
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
52
histone
52
histone modification
37
narrow histone mark
26
control
15
broad histone mark
Date released
193
May, 2020
40
May, 2022
26
August, 2017
8
July, 2019
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
288
bam
265
bigWig
154
tsv
113
bed narrowPeak
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
278
Homo sapiens
Biosample type
278
tissue
34
cell line
14
primary cell
Organ
504
connective tissue
445
adipose tissue
299
kidney
292
pancreas
278
liver
273
heart
253
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
278
AMP
Genome assembly (visualization)
205
hg19
176
GRCh38
Lab
238
AMP-T2D consortium
40
Karen Mohlke, UNC
files.file_type!
fastq
BIOSAMPLE
ASSAY
278 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
Hi-C
pCHi-C
single cell RNA-seq
tissue
liver
167
78
20
2
1
1
1
1
right lobe of liver
3
1
2
1
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