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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
ChIP-seq
185
total RNA-seq
94
single cell RNA-seq
59
ATAC-seq
28
DNase-seq
11
WGBS
4
Hi-C
4
pCHi-C
4
small RNA-seq
1
RRBS
Assay category
283
Transcription
201
DNA binding
87
DNA accessibility
12
DNA methylation
4
3D chromatin structure
Target of assay
147
histone
147
histone modification
75
narrow histone mark
72
broad histone mark
42
control
12
transcription factor
10
RNA binding protein
Date released
193
May, 2020
92
August, 2021
57
April, 2019
40
May, 2022
40
May, 2024
36
February, 2023
28
July, 2019
27
June, 2019
26
August, 2017
21
May, 2019
14
October, 2019
10
March, 2020
4
February, 2020
2
May, 2021
1
February, 2021
Available data
422
bigWig
420
bam
286
bed narrowPeak
265
tsv
137
bigBed narrowPeak
fastq
70
tagAlign
33
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
4
bedpe bed3+
4
hic
1
csv
Organism
591
Homo sapiens
Biosample type
591
tissue
100
cell line
27
primary cell
1
in vitro differentiated cells
Organ
504
connective tissue
445
adipose tissue
313
heart
299
kidney
292
pancreas
278
liver
253
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
591
AMP
Genome assembly (visualization)
367
GRCh38
318
hg19
Lab
511
AMP-T2D consortium
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
files.file_type!
fastq
BIOSAMPLE
ASSAY
591 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
tissue
liver
78
167
1
20
2
1
1
1
heart left ventricle
35
3
18
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
36
2
heart
14
4
1
18
1
1
1
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