Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
867
ChIP-seq
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
5
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
867
DNA binding
210
DNA accessibility
38
DNA methylation
5
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
282
August, 2017
225
October, 2019
193
May, 2020
164
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
31
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
19
April, 2020
19
November, 2019
16
February, 2023
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
Available data
1843
bam
1689
bigWig
1075
tsv
736
bed narrowPeak
558
bigBed narrowPeak
348
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2457
Homo sapiens
Biosample type
2466
tissue
882
primary cell
631
cell line
348
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
482
adipose tissue
440
pancreas
339
liver
261
brain
231
heart
223
kidney
146
bone element
114
limb
94
blood vessel
94
vasculature
79
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2380
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1661
GRCh38
1622
hg19
Lab
2285
AMP-T2D consortium
66
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
hic
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
2466 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
298
71
1
7
4
1
1
1
4
liver
167
145
2
1
3
1
1
1
kidney
49
27
13
64
6
1
1
bone element
84
+ See 166 more…
See all biosamples
Download