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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
259
ATAC-seq
178
DNase-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
27
WGBS
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
469
DNA accessibility
177
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
163
June, 2019
130
August, 2021
93
February, 2021
91
February, 2023
66
May, 2022
47
September, 2023
39
October, 2019
30
July, 2019
21
November, 2019
19
April, 2020
19
August, 2017
16
November, 2018
15
May, 2023
10
March, 2020
8
January, 2021
8
October, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1185
bam
1157
bigWig
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
792
Homo sapiens
Biosample type
794
tissue
539
primary cell
65
in vitro differentiated cells
59
cell line
3
stem cell
Organ
260
kidney
113
pancreas
100
bone element
79
heart
52
liver
49
eye
49
limb
46
blood vessel
46
musculature of body
46
vasculature
41
artery
33
brain
19
lung
18
ureter
16
adipose tissue
16
connective tissue
16
skeleton
12
epithelium
4
spleen
3
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
699
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
352
GRCh38
308
hg19
Lab
483
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
86
inconsistent ontology term
2
audit script error
files.file_type!
tsv
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
794 results
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ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
75
13
49
59
6
1
1
1
islet of Langerhans
67
1
31
7
3
1
4
1
4
bone element
84
liver
20
2
20
1
3
1
1
coronary artery
36
2
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