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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
105
total RNA-seq
101
ATAC-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
16
Hi-C
11
RRBS
11
WGBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
1
DNase-seq
Assay category
317
DNA binding
176
Transcription
134
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
184
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
126
August, 2017
85
February, 2021
81
October, 2019
66
August, 2021
66
May, 2022
56
February, 2023
47
September, 2023
31
May, 2020
29
October, 2018
25
November, 2017
23
May, 2019
19
April, 2020
16
April, 2019
16
July, 2019
12
December, 2017
10
March, 2020
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
March, 2019
3
May, 2023
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
1
January, 2019
1
November, 2019
Available data
204
bam
tsv
157
txt
122
tagAlign
101
bed narrowPeak
97
fastq
60
bigWig
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bed bed3+
1
bedpe
Organism
756
Homo sapiens
Biosample type
759
tissue
534
primary cell
183
cell line
125
in vitro differentiated cells
3
stem cell
Organ
124
kidney
121
liver
115
pancreas
92
bone element
64
connective tissue
63
adipose tissue
48
brain
48
eye
37
musculature of body
24
heart
23
limb
19
lung
18
blood vessel
18
vasculature
12
epithelium
11
nerve
8
skeleton
8
spleen
7
artery
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
664
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
GRCh38
837
hg19
Lab
526
AMP-T2D consortium
67
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
84
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
files.file_type!
tsv
assembly!
GRCh38
BIOSAMPLE
ASSAY
759 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
RNA microarray
single cell RNA-seq
snATAC-seq
Hi-C
RRBS
WGBS
pCHi-C
FAIRE-seq
MeRIP-seq
DNase-seq
tissue
islet of Langerhans
46
31
45
7
3
1
4
1
4
kidney
7
49
59
6
1
1
1
liver
70
20
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
36
3
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