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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
550
ChIP-seq
177
DNase-seq
158
ATAC-seq
16
WGBS
1
total RNA-seq
Assay category
550
DNA binding
335
DNA accessibility
16
DNA methylation
1
Transcription
Target of assay
459
histone modification
458
histone
236
narrow histone mark
222
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
153
October, 2019
92
May, 2019
69
August, 2017
64
April, 2019
64
August, 2021
57
November, 2017
45
October, 2018
36
December, 2017
35
February, 2023
22
November, 2018
20
November, 2019
19
May, 2020
14
July, 2019
14
October, 2017
12
May, 2023
8
February, 2021
6
January, 2019
3
December, 2018
2
March, 2019
2
March, 2020
2
September, 2017
Available data
1703
bam
1672
bigWig
tsv
843
bed narrowPeak
555
bigBed narrowPeak
280
fastq
204
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
896
Homo sapiens
Biosample type
902
tissue
360
cell line
284
primary cell
138
in vitro differentiated cells
3
stem cell
Organ
194
brain
163
kidney
138
heart
115
pancreas
101
blood vessel
101
vasculature
92
limb
86
liver
62
artery
38
musculature of body
27
nerve
26
adipose tissue
26
connective tissue
18
ureter
16
spleen
8
bone element
8
skeleton
3
eye
1
pituitary gland
Project
900
AMP
2
T1D
Genome assembly (visualization)
902
GRCh38
837
hg19
Lab
824
AMP-T2D consortium
75
Katalin Susztak, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
BIOSAMPLE
ASSAY
902 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
total RNA-seq
tissue
kidney
20
13
75
liver
75
2
islet of Langerhans
25
1
22
coronary artery
3
2
36
body of pancreas
26
4
4
2
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