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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
158
ATAC-seq
16
WGBS
1
total RNA-seq
Assay category
DNA binding
335
DNA accessibility
16
DNA methylation
1
Transcription
Date released
163
June, 2019
64
August, 2021
35
February, 2023
20
November, 2019
15
November, 2018
14
July, 2019
12
May, 2023
8
February, 2021
8
October, 2017
6
October, 2019
5
August, 2017
2
March, 2019
Available data
1155
bam
1128
bigWig
tsv
319
bed narrowPeak
179
bigBed narrowPeak
177
bed broadPeak
176
bed bed3+
176
bigBed broadPeak
125
fastq
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
Organism
352
Homo sapiens
Biosample type
352
tissue
77
primary cell
18
in vitro differentiated cells
14
cell line
Organ
143
kidney
72
heart
45
limb
44
blood vessel
44
vasculature
41
artery
37
pancreas
33
musculature of body
29
brain
18
ureter
8
adipose tissue
8
bone element
8
connective tissue
8
skeleton
4
liver
4
spleen
3
eye
3
nerve
Project
352
AMP
Genome assembly (visualization)
352
GRCh38
308
hg19
Lab
274
AMP-T2D consortium
75
Katalin Susztak, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
files.file_type!
tsv
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
352 results
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Clear Filters
DNase-seq
ATAC-seq
WGBS
total RNA-seq
tissue
kidney
13
75
coronary artery
2
36
islet of Langerhans
1
22
heart
18
1
muscle of arm
17
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