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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
590
ChIP-seq
177
DNase-seq
158
ATAC-seq
1
total RNA-seq
Assay category
590
DNA binding
335
DNA accessibility
1
Transcription
Target of assay
494
histone modification
493
histone
251
narrow histone mark
242
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
153
October, 2019
92
May, 2019
67
August, 2017
64
April, 2019
64
August, 2021
57
November, 2017
45
October, 2018
40
May, 2024
36
December, 2017
35
February, 2023
20
November, 2019
19
May, 2020
16
November, 2018
14
October, 2017
12
May, 2023
8
February, 2021
6
January, 2019
6
July, 2019
3
December, 2018
2
March, 2019
2
March, 2020
2
September, 2017
Available data
1712
bigWig
1703
bam
tsv
883
bed narrowPeak
555
bigBed narrowPeak
280
fastq
204
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
bigBed bedMethyl
1
tagAlign bed3+
Organism
920
Homo sapiens
Biosample type
926
tissue
359
cell line
284
primary cell
138
in vitro differentiated cells
3
stem cell
Organ
194
brain
172
heart
163
kidney
111
pancreas
100
blood vessel
100
vasculature
91
limb
86
liver
62
artery
37
musculature of body
27
nerve
24
adipose tissue
24
connective tissue
18
ureter
14
spleen
8
bone element
8
skeleton
3
eye
1
pituitary gland
Project
924
AMP
2
T1D
Genome assembly (visualization)
926
GRCh38
828
hg19
Lab
808
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
tsv
bigBed bedMethyl
BIOSAMPLE
ASSAY
926 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
tissue
kidney
20
13
75
liver
75
2
islet of Langerhans
25
1
22
coronary artery
3
2
36
left cardiac atrium
40
1
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