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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
435
ChIP-seq
167
DNase-seq
148
ATAC-seq
8
WGBS
1
total RNA-seq
Assay category
435
DNA binding
315
DNA accessibility
8
DNA methylation
1
Transcription
Target of assay
421
histone
421
histone modification
223
narrow histone mark
198
broad histone mark
14
transcription factor
12
RNA binding protein
Date released
163
June, 2019
153
October, 2019
92
May, 2019
64
April, 2019
64
August, 2021
57
November, 2017
40
May, 2024
35
February, 2023
20
November, 2019
19
May, 2020
14
July, 2019
14
October, 2018
12
May, 2023
8
February, 2021
2
March, 2019
2
March, 2020
Available data
1712
bigWig
1703
bam
tsv
883
bed narrowPeak
555
bigBed narrowPeak
fastq
204
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
759
Homo sapiens
Biosample type
759
tissue
175
primary cell
44
cell line
35
in vitro differentiated cells
Organ
185
brain
178
heart
163
kidney
101
blood vessel
101
vasculature
92
limb
62
artery
42
pancreas
38
musculature of body
27
nerve
24
liver
18
ureter
8
bone element
8
skeleton
3
adipose tissue
3
connective tissue
3
eye
1
pituitary gland
Project
757
AMP
2
T1D
Genome assembly (visualization)
759
GRCh38
640
hg19
Lab
642
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
files.file_type!
tsv
fastq
BIOSAMPLE
ASSAY
759 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
total RNA-seq
tissue
kidney
20
13
75
coronary artery
3
2
36
left cardiac atrium
40
1
heart left ventricle
28
3
2
2
heart
12
18
1
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